MaGUI: A graphical user interface for analysis and annotation of DNA microarray data

dc.contributor.author Bharne, Dhammapal
dc.contributor.author Kant, Praveen
dc.contributor.author Vindal, Vaibhav
dc.date.accessioned 2022-03-27T05:18:20Z
dc.date.available 2022-03-27T05:18:20Z
dc.date.issued 2019-01-01
dc.description.abstract maGUI is a graphical user interface designed to analyze microarray data produced from experiments performed on various platforms such as Affymetrix, Agilent, Illumina, and Nimblegen and so on, automatically. It follows an integrated workflow for pre-processing and analysis of the microarray data. The user may proceed from loading of microarray data to normalization, quality check, filtering, differential gene expression, principal component analysis, clustering and classification. It also provides miscellaneous applications such as gene set test and enrichment analysis for identifying gene symbols using Bioconductor packages. Further, the user can build a co-expression network for differentially expressed genes. Tables and figures generated during the analysis can be viewed and exported to local disks. The graphical user interface is very friendly especially for the biologists to perform the most microarray data analyses and annotations without much need of learning R command line programming. Availability and Implementation: maGUI is an R package which can be downloaded freely from Comprehensive R Archive Network resource. It can be installed in any R environment with version 3.0.2 or above.
dc.identifier.citation Open Bioinformatics Journal. v.12(1)
dc.identifier.uri 10.2174/1875036201912010040
dc.identifier.uri https://openbioinformaticsjournal.com/VOLUME/12/PAGE/40/
dc.identifier.uri https://dspace.uohyd.ac.in/handle/1/7960
dc.subject 10.2174/1875036201912010040
dc.subject Bioconductor
dc.subject Comprehensive R Archive Network
dc.subject Gene set enrichment analysis
dc.subject Gene set test analysis
dc.subject Graphical user interface
dc.subject Microarray data analysis
dc.subject R programming language
dc.title MaGUI: A graphical user interface for analysis and annotation of DNA microarray data
dc.type Journal. Letter
dspace.entity.type
Files
License bundle
Now showing 1 - 1 of 1
No Thumbnail Available
Name:
license.txt
Size:
1.71 KB
Format:
Plain Text
Description: